DataTypes
Object
Annotation
AntigenicAnnotation
BL2GAnnotation
BLOCKAnnotation
CpGAnnotation
EquicktandemAnnotation
FeatureAnnotation
LutefiskAnnotation
MolWeightAnnotation
ProbMolWeightAnnotation
MotifAnnotation
ScoredMotifAnnotation
InterProMotifAnnotation
RestrictAnnotation
SigcleaveAnnotation
StructureBoundaries
StructureFragment
TransmembraneAnnotation
AnnotationHits
Array
ArrayFloat
MolWeightsArray
ArrayInteger
ArrayString
ArrayXYData
BasicAnnotation
Boolean
ByoDynOEDParameter
ByoDynTarget
CATHDomain
Clustering
CommentedObject
CommentedWeightedObject
DateTime
Domain
AnnotatedDomain
Element
ElementFloat
ElementInteger
ElementString
ElementXYData
ENSEMBLHomolog
ExpressionCore
ExpressionStatistics
FamilyBLOCKAnnotation
Float
GOTerm
HierarchicalClustering
HMMPfam_Report
HMMSearch_Report
Image_Encoded
Typed_Image
Integer
Interaction
InteractionMethod
Interactor
ISS_Report
LutefiskReport
Matrix
MatrixFloat
Distance_Matrix
NCut_Matrix
MatrixInteger
MatrixString
MultiParameter
OMIM
Parameter
Parameters4Values
ParametersToVary
target
targetArgument
Pattern
MatchingPattern
PepinfoReport
ProdomMotif
PrositeMotif
Rules
SCOPLayerNode
String
StructureDomain
SCOPDomain
text-plain
text-formatted
BLAST-Text
Clustalw_Evaluated_Text
ClusterProfile_Text
CodcmpReport_Text
CodonUsageTable_Text
Consensus_Sequence_Text
HMM_Text
DCCP_Text
DifferentialExpressionTest-Text
DifferentialExpressionTest_Text
DSSP_Text
DTA_Text
EMBL_Text
Enzymatic_Text
FASTA
FASTA_AA
FASTA_AA_multi
FASTA_NA
FASTA_NA_multi
FASTA_pep
FASTA_Text
FatiGO_Text
FSOLV_Text
FSSP_Text
GenBank_Text
GFF
GFF2
GFF3
HSSP_Text
List-Text
List_Text
MEME_Text
Meta_Alignment_Text
MicroArrayData-Text
MicroArrayData_Text
mmCIF-Text
mmCIF_Text
MotifMatrix
NAMD_Conf_Text
NCBI_BLAST_Text
NCut_Clusters
NCut_Text
NDB-Text
Newick-Text
Newick_Text
PDB-Text
AnnotatedStructure
NAMD_Structure
NAMD_Output
PDB_Enriched
Structure_Alignment_Report
Pepcoil_Text
Pepstats_Text
PHD_Text
Phylip_treefile_Text
Phylip_tree_Text
PMUT_Text
Prediction-Text
PredictorTraining_Text
PrositeDoc_Text
PSF_Text
RefSeq_Text
SequenceDescription_Text
Sequence_alignment_report
Clustalw_Text
MSF
Phylip_Text
Phylip_Interleaved_Text
PIR_Text
Stockholm_Text
SwissProt_Text
TFscan_Text
URL-Text
WeightedList-Text
WeightedList_Text
text-html
DGPI_Report
TreeDet_Annotation_HTML
text-xhtml
text-xml
BLAST_XML
ByoDynInput
CathDomainDescription_XML
DASGFF
FatiGO-XML
FatiScan-XML
FatiScan_Text
FunCUT_Annotation_XML
GOGraph
IntAct_XML
ISS_Annotation_XML
PredictionModel-XML
SIAM_Annotation_XML
TreeDet_Annotation_XML
TreeDet_Report
VirtualSequence
GenericSequence
AminoAcidSequence
CommentedAASequence
AnnotatedAASequence
AntigenicAnnotatedAASequence
AntigenicReport
BlocksAnnotatedAASequence
FeatureAnnotatedAASequence
InterProMotifAnnotatedAASequence
LutefiskAnnotatedAASequence
MolWeightsAnnotatedAASequence
DigestReport
EmowseAnnotatedAASequence
MotifAnnotatedAASequence
PPSearchReport
ProbMolWeightsAnnotatedAASequence
PepNovoReport
ScoredMotifAnnotatedAASequence
PatmatdbReport
PatmatmotifsReport
SigcleaveAnnotatedAASequence
SigcleaveReport
TransmembraneAnnotatedAASequence
TransmembraneReport
CommentedAASubsequence
DomainAnnotatedSequence
FeatureAASequence
WeightedAminoAcidSequences
NucleotideSequence
CommentedNASequence
AnnotatedNASequence
CpGAnnotatedNASequence
CpGReport
EquicktandemAnnotatedNASequence
EquicktandemReport
RestrictAnnotatedNASequence
RestrictReport
DNASequence
CommentedDNASequence
TTS
RNASequence
CommentedRNASequence
PropertySequence
WeightedObject
Zip_Encoded
Services
Service
Bioinformatics
Alignment
runEmbossConsFromAlignment
runMetaAlignment
runMetaAlignmentGFF
runMultiPairwiseMetaAlignment
runMultiPairwiseMetaAlignmentGFF
runNCBIFormatdb
Aligning_Differences
Aligning_Structures
DotPlotting
Multiple_Sequence_Comparison
runClustalwFast
runClustalwFast
runClustalwFastUMA
runClustalwFull
runFASS
runFASSFromClustalw
runFASSFromMSF
runMB
runMuscleFromSequences
runSM
runSQUARE
runTcoffeeEvaluateAlignments
runTcoffeeFromSequences
Pairwise_Sequence_Comparison
Pairwise_Global_Aligning
Pairwise_Local_Aligning
runBlat
runDecypherBlastn
runDecypherBlastp
runDecypherBlastx
runFastaForAminoAcids
runFastaForNucleotides
runFasts
runFastx
runFasty
runNCBIBlastAgainstDB
runNCBIBlastn
runNCBIBlastnXML
runNCBIBlastn_2Seqs
runNCBIBlastp
runNCBIBlastp1
runNCBIBlastpXML
runNCBIBlastp_2Seqs
runNCBIBlastx
runNCBIBlastxXML
runNCBIBlastx_2Seqs
runNCBITBlastn
runNCBITBlastnXML
runNCBITBlastn_2Seqs
runNCBITBlastx
runNCBITBlastxXML
runNCBITBlastx_2Seqs
runPSIBlastpFromAminoAcidSequence
runPSIBlastpFromFASTA
runTFastx
runTFasty
runWUBlastn
runWUBlastn_2Seqs
runWUBlastp
runWUBlastp_2Seqs
runWUBlastx
runWUBlastx_2Seqs
runWUTBlastn
runWUTBlastn_2Seqs
runWUTBlastx
runWUTBlastx_2Seqs
Profiling
runHMMBuild
runHMMPfam
runHMMSearchAgainstDB
runHMMSearchAgainstSeqs
Single_Sequence_Comparison
Pairwise_2Global_Aligning
runEmbossNeedleFromSequences
Pairwise_2Local_Aligning
runEmbossWaterFromSequences
Annotations
runEmbossCpGreport_GFF_FromFasta
runEmbossTFscan_GFF_FromFasta
runFatiGO
runFatiScan
runFunCUT
runISS
runISSComplete
runOFunCUT
runSIAM
runSimpleTfbs
show3DFeature
Biochemistry
EnzymeKinetics
runEmbossFindkm
Clustering
displayClustering
runClustering
Database
Retrieving
browseCATHClassification
getCATHHierarchyCodesFromPDBID
getCrossReferencesInUniprot
getCrossReferencesSQL
getEnsemblIDsFromUniprot
getEntryFromCATH
getEntryFromSCOPDomainID
getEntryFromSCOPPath
getGraphFromTerm
getHomologiesFromEnsembl
getHSSPIDsFromUniprot
getInteractingMethods
getInteractionMethodDesc
getInteractions
getInteractionsXML
getPDBFromTransfac
getPDBIdsFromProteinID
getPDBIDsFromUniprot
getTermsFromProduct
getUniprotAccessionsFromID
getUniprotIDsFromAccession
getUniprotIDsFromGOTerm
getUniProtIdsFromProteinID
WhichNameSpaceForID
GettingAlignments
getAAFromWeightedObject
GettingInteractions
GettingSequences
GettingAminoacids
getAminoAcidSequence
getAminoAcidSequenceCollection
getAminoAcidSequenceFromPDB
getAminoAcidSequenceUMA
getFeatureAASequenceFromUniprot
GettingNucleotides
getCDSSequence
getNucleotideSequence
getSequenceByRegionFromENSEMBL
getSequencesFromENSEMBLHomology
GettingStructures
getEntryFromPDB
getHeaderFromPDB
getmmCifFileFromPDBID
getStructureFromPDB
GettingText
getCodonTableFromEmboss
getDocumentationFromProsite
getEntryFromDSSP
getEntryFromEMBL
getEntryFromFSSP
getEntryFromGenBank
getEntryFromOMIM
getEntryFromPfam
getEntryFromProsite
getEntryFromRefSeq
getEntryFromSwissProt
getEntryFromTrEMBL
getEntryFromUniProt
getGOTerm
Searching
getCATHDomainsFromPDBID
runBlastXP
textDBQuery
Distances
Arraying
Phylogenetics
runCreateTreeFromClustalw
runPhylipDnaml
runPhylipDnaml
runPhylipDnamlk
runPhylipDnapars
runPhylipDnapenny
runPhylipFitch
runPhylipKitsch
runPhylipNeighbor
runPhylipProtpars
Distance_Matrix_Computing
runNCut
runPhylipDnadist
runPhylipProtdist
Phylogenetics_Tree_Computing
runCreateTreeFromClustalw
runPhylipDnaml
runPhylipDnaml
runPhylipDnamlk
runPhylipDnapars
runPhylipDnapenny
runPhylipFitch
runPhylipKitsch
runPhylipNeighbor
runPhylipProtpars
GeneExpresion
GeneExpression
getExpressionStatistics
runDifferentialExpressionTest
runPredictorTraining
runPreprocessing
Identification
Proteomics
SequenceAnalysis
runEmbossDigestFromSequence
runEmbossEmowse
runEmbossSigcleaveFromSequence
runEmbossTmapFromSequence
runGenewise
runMemeHTML
runMemeText
Composition
runEmbossCodcmpFromTables
runEmbossCuspFromSequence
runEmbossPepstatsFromSequence
Editing
viaBioinformaticsApplication
viaWEB
GeneFinding
runGeneIDGFF
runProStar_GFF_FromFasta
runSGP2GFF
Mutation
runPMUTHotSpotFromAminoAcidSequence
runPMUTHotSpotFromFASTA
Nucleotic_Motifs
runEmbossCpGplotFromSequence
runEmbossCpGreportFromSequence
runEmbossTFscanFromSequence
runMatScanGFF
runMatScanGFFCollection
runMatScanGFFCollectionVsInputMatrices
Primers
Protein_Motifs
getPrositeAnnStructure
getPrositeAnnStructureFromPDBID
runEmbossPatmatdb
runEmbossPatmatdbFromSequence
runEmbossPatmatmotifsFromSequence
runPPSearchAgainstProsite
runPratt
runPs_scanAgainstProsite
runPs_scanAgainstSequence
searchBLOCKS
searchInterPro
Repetitions
runEmbossEquicktandemFromSequence
Restrictions
runEmbossRestrictFromSequence
StructuralStudies
runBindProteins
DNA
runDisruptionPhysicalProperties
runFlexibilityPhysicalProperties
runNonlinearPhysicalProperties
runParmbsc0PhysicalProperties
runStabilityPhysicalProperties
runStructurePhysicalProperties
runUnusualPhysicalProperties
showPDBFromFasta
Interactions
Nucleotics_2D_Structures
PhysicoChemical_Properties
addDisulphideBondsPDB
addHydrogensPDB
cleanPDB
optimizeStructureFromNAMD_Structure
optimizeStructureFromNAMD_Structure
runEmbossAntigenicFromSequence
runEmbossChargeFromSequence
runEmbossIepFromSequence
runEmbossOctanolFromSequence
runEmbossPepinfoFromSequence
runEmbossPepwindowallFromSequences
runEmbossPepwindowFromSequence
runFSOLVFromPDBText
runPHDFromAminoAcidSequence
runPHDFromFASTA
solvateProteinFromNAMD_Structure
Protein_3D_Structures
AbInitio_Methods
Homology_Methods
Threadind_Methods
Protein_Secondary_Structures
runEmbossPepcoilFromSequence
runPHDFromBLASTText
runPMUTHotSpotFromBLASTText
Translating
runEmbossGetorfFromSequence
runEmbossTranseqFromSequence
translateGeneIDGFFPredictions
ObjectHandling
getPersistentFile
loadPersistentFile
removeDuplicatedObjects
Converting
fromClustalwToPhylip
fromEMBLToMGI
fromEMBLToMGI
fromFASTAToAminoAcidSequence
fromFASTAToAminoAcidSequenceCollection
fromFastaToCommentedAASequence
fromFastaToCommentedNASequence
fromFASTAToDNASequence
fromFASTAToDNASequenceCollection
fromFastaToGenericSequence
fromFunCUTtoDASGFF
fromGenericSequenceCollectionToFASTA
fromGenericSequenceCollectionToFasta
fromGenericSequenceToFASTA
fromGenericSequenceToFasta
fromGenericToAminoAcidSequence
fromGenericToNucleotideSequence
fromMGIToEMBL
fromMGIToRefSeq
frommmCifToNDBText
frommmCifToPDBText
fromNDBTextTommCif
fromNDBTextToPDBText
fromPDBTextToNDBText
parseFromIntAct
Creating
Displaying
displayDomainsFromAnnStructure
multiplotArrayXYData
plotArrayXYData
plotFeatureAASequence
showFSOLVonStructure
showPMUTonStructure
Joining
Parsing
fromMetaAlignmentsToScoreMatrix
fromMetaAlignmentsToTextScoreMatrix
getBestHitsFromBlast
getGeneListFromDifferentialExpressionTest
getGeneWeightedListFromDifferentialExpressionTest
getIdNameValueFromBlast
getIDsFromBlast
parseAminoAcidSequenceFromPDBText
parseAnatomicalStructures
parseBlastIDs
parseENSEMBLSliceInformation
parseExpressedGenes
parseExpressionStatistics
parseFeatureAASequenceFromFSOLVText
parseFeatureAASequenceFromPMUTText
parseFeatureAASequenceWithArticle
parseGFFFromFeatureAASequence
parseMatrixFromMotif
parseMotifMatricesFromMEME
parseMultipleAlignFromBLASTText
parseMWfromMWAnnotatedAASequence
parsePatternFromMotif
parsePDBIntoChains
parsePDBIntoSeqs
parsePropertySequenceFromFSOLVText
parsePropertySequenceFromPMUTText
parseRulesFromMotif
parseSwissIntoPDBids
runBlast2gene
Splitting
Namespaces
Aarhus/Ghent-2DPAGE
ADDA
AGD
aGEM
AGI_LocusCode
getInteractingMethods
getInteractions
AnatomicalOntology
ANU-2DPAGE
ArrayExpress
BioCyc
BRENDA
BuruList
canon
CATH
browseCATHClassification
getEntryFromCATH
CAZY
ChEBI
CL
CleanEx
COG
COMPLUYEAST-2DPAGE
Cornea-2DPAGE
CYGD
dictyBase
DIP
DisProt
DOSAC-COBS-2DPAGE
DrugBank
DSSP
getEntryFromDSSP
getEntryFromPDB
getmmCifFileFromPDBID
EC
EchoBASE
ECO2DBASE
EcoGene
EGAD
EMAGE
EMAP
getExpressionStatistics
EMBL
fromEMBLToMGI
fromEMBLToMGI
getCDSSequence
getEntryFromEMBL
getNucleotideSequence
ENSEMBL
getCrossReferencesSQL
getHomologiesFromEnsembl
euHCVdb
FB
FLYBASE
FSSP
getEntryFromFSSP
getEntryFromPDB
getmmCifFileFromPDBID
GenBank
getCDSSequence
getEntryFromGenBank
getIDsFromBlast
getNucleotideSequence
Gene3D
GeneDB_Spombe
GeneFarm
GeneId
GenomeReviews
GenProtEC
GENSAT
GermOnline
GlycoSuiteDB
GO
getCrossReferencesSQL
getGOTerm
getGraphFromTerm
GOC
Gramene
H-InvDB
HAMAP
HGNC
HIV
HOMSTRAD
HPA
HSC-2DPAGE
HSSP
getEntryFromPDB
getmmCifFileFromPDBID
http
HUGO
IntAct
getInteractingMethods
getInteractions
getInteractionsXML
INTERPRO
ISBN
ISSN
IUPHAR
KEGG
KEGG_PATHWAY
LegioList
Leproma
LinkHub
ListiList
LOAD
MA
getExpressionStatistics
MaizeGDB
MEDLINE
MEROPS
MeSH
MetaCyc
MGD
MGI
fromMGIToEMBL
fromMGIToRefSeq
getExpressionStatistics
MIM
MIPS_funcat
MultiFun
MypuList
NCBI_Acc
OGP
OMIM
getEntryFromOMIM
Orphanet
PAMGO
PANTHER
PDB
addDisulphideBondsPDB
addHydrogensPDB
cleanPDB
getAminoAcidSequence
getAminoAcidSequenceFromPDB
getCATHDomainsFromPDBID
getCATHHierarchyCodesFromPDBID
getCrossReferencesSQL
getEntryFromPDB
getHeaderFromPDB
getIDsFromBlast
getmmCifFileFromPDBID
getPrositeAnnStructureFromPDBID
getStructureFromPDB
optimizeStructureFromNAMD_Structure
optimizeStructureFromNAMD_Structure
parseAminoAcidSequenceFromPDBText
parseMultipleAlignFromBLASTText
parsePDBIntoChains
parsePDBIntoSeqs
runBlastXP
runFSOLVFromPDBText
runPHDFromAminoAcidSequence
runPHDFromBLASTText
runPHDFromFASTA
runPMUTHotSpotFromAminoAcidSequence
runPMUTHotSpotFromBLASTText
runPMUTHotSpotFromFASTA
runPSIBlastpFromAminoAcidSequence
runPSIBlastpFromFASTA
solvateProteinFromNAMD_Structure
PDBsum
PeptideAtlas
PeroxiBase
Pfam
getEntryFromPfam
PFAMA
PharmGKB
PHCI-2DPAGE
PhosSite
PhotoList
PIR
PIRSF
PMID
PMMA-2DPAGE
PO
PptaseDB
PRINTS
ProDom
PROFILE
Prosite
getCrossReferencesSQL
getDocumentationFromProsite
getEntryFromProsite
PROSITE_PROFILE
ProteinID
getPDBIdsFromProteinID
getUniProtIdsFromProteinID
PseudoCAP
PSI-MI
getInteractionMethodDesc
PubChem
Rat-heart-2DPAGE
Reactome
REBASE
RefSeq
getAminoAcidSequence
getEntryFromRefSeq
getIDsFromBlast
getNucleotideSequence
REGIA
REPRODUCTION-2DPAGE
RESID
Rfam
RGD
RNAmods
SagaList
Sanger
SCOP
getCrossReferencesSQL
getEntryFromSCOPDomainID
getEntryFromSCOPPath
SGD
Siena-2DPAGE
SMART
SMR
SP
getInteractingMethods
getInteractions
getInteractionsXML
SPTR
getInteractingMethods
getInteractions
getInteractionsXML
SP_KW
SSF
StyGene
SubtiList
SWISS-2DPAGE
Swiss-Prot
getAminoAcidSequence
getAminoAcidSequenceCollection
getEntryFromSwissProt
getIDsFromBlast
getInteractingMethods
getInteractions
getInteractionsXML
parseMultipleAlignFromBLASTText
runBlastXP
runPHDFromAminoAcidSequence
runPHDFromBLASTText
runPHDFromFASTA
runPMUTHotSpotFromAminoAcidSequence
runPMUTHotSpotFromBLASTText
runPMUTHotSpotFromFASTA
runPSIBlastpFromAminoAcidSequence
runPSIBlastpFromFASTA
TAIR
TC
TGD
THESEU_minamespace1
TIGR
TIGRFAMs
TIGR_role
TIGR_TIGRFAMS
TRANSFAC
TrEMBL
getAminoAcidSequence
getAminoAcidSequenceCollection
getEntryFromTrEMBL
getIDsFromBlast
getInteractingMethods
getInteractions
getInteractionsXML
parseMultipleAlignFromBLASTText
runBlastXP
runPHDFromAminoAcidSequence
runPHDFromBLASTText
runPHDFromFASTA
runPMUTHotSpotFromAminoAcidSequence
runPMUTHotSpotFromBLASTText
runPMUTHotSpotFromFASTA
runPSIBlastpFromAminoAcidSequence
runPSIBlastpFromFASTA
TubercuList
UM
UM-BBD
UM-BBD_enzymeID
UM-BBD_pathwayID
UniGene
UniProt
getAminoAcidSequence
getAminoAcidSequenceCollection
getCrossReferencesInUniprot
getCrossReferencesSQL
getEnsemblIDsFromUniprot
getEntryFromUniProt
getFeatureAASequenceFromUniprot
getHSSPIDsFromUniprot
getIDsFromBlast
getInteractingMethods
getInteractions
getInteractionsXML
getPDBIDsFromUniprot
getUniprotAccessionsFromID
getUniprotIDsFromAccession
parseMultipleAlignFromBLASTText
parseSwissIntoPDBids
runBlastXP
runPHDFromAminoAcidSequence
runPHDFromBLASTText
runPHDFromFASTA
runPMUTHotSpotFromAminoAcidSequence
runPMUTHotSpotFromBLASTText
runPMUTHotSpotFromFASTA
runPSIBlastpFromAminoAcidSequence
runPSIBlastpFromFASTA
UniProtKB
URL
VectorBase
VEGA
WB_REF
WormBase
WormPep
ZFIN
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