<!-- Published by JAX-WS RI at http://jax-ws.dev.java.net. RI's version is JAX-WS RI 2.2.1-hudson-28-. --><!-- Generated by JAX-WS RI at http://jax-ws.dev.java.net. RI's version is JAX-WS RI 2.2.1-hudson-28-. --><definitions xmlns="http://schemas.xmlsoap.org/wsdl/" xmlns:owl="http://www.w3.org/2002/07/owl#" xmlns:sawsdl="http://www.w3.org/ns/sawsdl" xmlns:wsu="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-utility-1.0.xsd" xmlns:wsp="http://www.w3.org/ns/ws-policy" xmlns:wsp1_2="http://schemas.xmlsoap.org/ws/2004/09/policy" xmlns:wsam="http://www.w3.org/2007/05/addressing/metadata" xmlns:wsaw="http://www.w3.org/2006/05/addressing/wsdl" xmlns:soap="http://schemas.xmlsoap.org/wsdl/soap/" xmlns:tns="urn:lsid:inb.bsc.es:service" xmlns:xsd="http://www.w3.org/2001/XMLSchema" targetNamespace="urn:lsid:inb.bsc.es:service" xmlns:jaxws="http://java.sun.com/xml/ns/jaxws" name="runPhylipProtdist">
<jaxws:bindings><jaxws:package name="es.bsc.inb.service" /></jaxws:bindings><wsp:Policy xmlns:wsapw3c="http://www.w3.org/2006/05/addressing/wsdl" wsu:Id="runPhylipProtdistPortBinding_Wsaw_Addressing_Policy-runPhylipProtdistPortBinding_WSAM_Addressing_Policy-runPhylipProtdistPortBinding_WSAM_Addressing_Policy">
<wsapw3c:UsingAddressing wsp:Optional="true" />
<wsam:Addressing wsp:Optional="true">
<wsp:Policy />
</wsam:Addressing>
</wsp:Policy>
<types>
<xsd:schema>
<xsd:import namespace="urn:lsid:inb.bsc.es:response" schemaLocation="http://www.inab.org:80/dproxy/inb.bsc.es/runPhylipProtdist?xsd=3" />
</xsd:schema>
<xsd:schema>
<xsd:import namespace="urn:lsid:inb.bsc.es:request" schemaLocation="http://www.inab.org:80/dproxy/inb.bsc.es/runPhylipProtdist?xsd=4" />
</xsd:schema>
<xsd:schema>
<xsd:import namespace="urn:lsid:inb.bsc.es:fault" schemaLocation="http://www.inab.org:80/dproxy/inb.bsc.es/runPhylipProtdist?xsd=1" />
</xsd:schema>
<xsd:schema>
<xsd:import namespace="urn:lsid:bionemus.org:datatypes" schemaLocation="http://www.inab.org:80/dproxy/inb.bsc.es/runPhylipProtdist?xsd=5" />
</xsd:schema>
<xsd:schema>
<xsd:import namespace="urn:lsid:biomoby.org:objectclass" schemaLocation="http://www.inab.org:80/dproxy/inb.bsc.es/runPhylipProtdist?xsd=2" />
</xsd:schema>
</types>
<message name="runPhylipProtdist">
<part xmlns:ns1="urn:lsid:inb.bsc.es:request" name="parameters" element="ns1:RunPhylipProtdistRequest" />
<part xmlns:ns2="urn:lsid:inb.bsc.es:request" name="retries" element="ns2:retries" />
<part xmlns:ns3="urn:lsid:inb.bsc.es:request" name="timeout" element="ns3:timeout" />
</message>
<message name="runPhylipProtdistResponse">
<part xmlns:ns4="urn:lsid:inb.bsc.es:response" name="result" element="ns4:RunPhylipProtdistResponse" />
</message>
<message name="RunPhylipProtdistException">
<part xmlns:ns5="urn:lsid:inb.bsc.es:fault" name="fault" element="ns5:RunPhylipProtdistException" />
</message>
<portType name="runPhylipProtdist" sawsdl:modelReference="urn:lsid:inb.bsc.es:service:runPhylipProtdist">
<operation name="runPhylipProtdist" parameterOrder="parameters retries timeout">
<sawsdl:attrExtensions sawsdl:modelReference="urn:lsid:inb.bsc.es:operation:runPhylipProtdist" />
<input wsaw:Action="urn:lsid:inb.bsc.es:operation:runPhylipProtdist" wsam:Action="urn:lsid:inb.bsc.es:operation:runPhylipProtdist" message="tns:runPhylipProtdist" />
<output wsam:Action="urn:lsid:inb.bsc.es:service:runPhylipProtdist:runPhylipProtdistResponse" message="tns:runPhylipProtdistResponse" />
<fault message="tns:RunPhylipProtdistException" name="RunPhylipProtdistException" wsam:Action="urn:lsid:inb.bsc.es:service:runPhylipProtdist:runPhylipProtdist:Fault:RunPhylipProtdistException" />
</operation>
</portType>
<binding name="runPhylipProtdistPortBinding" type="tns:runPhylipProtdist">
<wsaw:UsingAddressing />
<wsp:PolicyReference URI="#runPhylipProtdistPortBinding_Wsaw_Addressing_Policy-runPhylipProtdistPortBinding_WSAM_Addressing_Policy-runPhylipProtdistPortBinding_WSAM_Addressing_Policy" />
<soap:binding transport="http://schemas.xmlsoap.org/soap/http" style="document" />
<operation name="runPhylipProtdist">
<soap:operation soapAction="urn:lsid:inb.bsc.es:operation:runPhylipProtdist" />
<input>
<soap:body use="literal" parts="parameters" />
<soap:header message="tns:runPhylipProtdist" part="retries" use="literal" />
<soap:header message="tns:runPhylipProtdist" part="timeout" use="literal" />
</input>
<output>
<soap:body use="literal" />
</output>
<fault name="RunPhylipProtdistException">
<soap:fault name="RunPhylipProtdistException" use="literal" />
</fault>
</operation>
</binding>
<service name="runPhylipProtdist">
<port name="runPhylipProtdistPort" binding="tns:runPhylipProtdistPortBinding">
<soap:address location="http://www.inab.org:80/dproxy/inb.bsc.es/runPhylipProtdist" />
</port>
</service>
<owl:Ontology>
<owl:Declaration>
<owl:Class IRI="urn:lsid:inb.bsc.es:service:runPhylipProtdist" />
</owl:Declaration>
<owl:AnnotationAssertion>
<owl:AnnotationProperty IRI="urn:lsid:bionemus.org:annotation:type" />
<owl:IRI>urn:lsid:inb.bsc.es:service:runPhylipProtdist</owl:IRI>
<owl:Literal>Distance_Matrix_Computing</owl:Literal>
</owl:AnnotationAssertion>
<owl:AnnotationAssertion>
<owl:AnnotationProperty IRI="urn:lsid:bionemus.org:annotation:authority" />
<owl:IRI>urn:lsid:inb.bsc.es:service:runPhylipProtdist</owl:IRI>
<owl:Literal>inb.bsc.es</owl:Literal>
</owl:AnnotationAssertion>
<owl:AnnotationAssertion>
<owl:AnnotationProperty IRI="urn:lsid:bionemus.org:annotation:email" />
<owl:IRI>urn:lsid:inb.bsc.es:service:runPhylipProtdist</owl:IRI>
<owl:Literal>rroyo@lsi.upc.edu</owl:Literal>
</owl:AnnotationAssertion>
<owl:Declaration>
<owl:Class IRI="urn:lsid:inb.bsc.es:operation:runPhylipProtdist" />
</owl:Declaration>
</owl:Ontology>
<owl:Ontology>
<owl:EquivalentClasses>
<owl:Class IRI="urn:lsid:inb.bsc.es:request:RunPhylipProtdistRequest" />
<owl:ObjectIntersectionOf>
<owl:ObjectAllValuesFrom>
<owl:ObjectProperty IRI="#alignment" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Phylip_Text" />
</owl:ObjectAllValuesFrom>
<owl:ObjectMaxCardinality cardinality="1">
<owl:ObjectProperty IRI="#alignment" />
</owl:ObjectMaxCardinality>
<owl:ObjectAllValuesFrom>
<owl:ObjectProperty IRI="#parameters" />
<owl:Class IRI="urn:lsid:inb.bsc.es:request:RunPhylipProtdistSecondaryParameters" />
</owl:ObjectAllValuesFrom>
<owl:ObjectMaxCardinality cardinality="1">
<owl:ObjectProperty IRI="#parameters" />
</owl:ObjectMaxCardinality>
</owl:ObjectIntersectionOf>
</owl:EquivalentClasses>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Phylip_Text" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Sequence_alignment_report" />
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Sequence_alignment_report" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:text-formatted" />
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:text-formatted" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:text-plain" />
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:text-plain" />
<owl:ObjectIntersectionOf>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#content" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#string" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#content" />
</owl:DataMaxCardinality>
<owl:Class IRI="urn:lsid:bionemus.org:datatypes:NemusObject" />
</owl:ObjectIntersectionOf>
</owl:SubClassOf>
<owl:EquivalentClasses>
<owl:Class IRI="urn:lsid:bionemus.org:datatypes:NemusObject" />
<owl:ObjectIntersectionOf>
<owl:ObjectAllValuesFrom>
<owl:ObjectProperty IRI="#reference" />
<owl:Class IRI="urn:lsid:bionemus.org:datatypes:NemusReference" />
</owl:ObjectAllValuesFrom>
</owl:ObjectIntersectionOf>
</owl:EquivalentClasses>
<owl:EquivalentClasses>
<owl:Class IRI="urn:lsid:inb.bsc.es:request:RunPhylipProtdistSecondaryParameters" />
<owl:ObjectIntersectionOf>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#category" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#string" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#category" />
</owl:DataMaxCardinality>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#changeprob" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#float" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#changeprob" />
</owl:DataMaxCardinality>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#gencode" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#string" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#gencode" />
</owl:DataMaxCardinality>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#method" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#string" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#method" />
</owl:DataMaxCardinality>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#ttratio" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#float" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#ttratio" />
</owl:DataMaxCardinality>
</owl:ObjectIntersectionOf>
</owl:EquivalentClasses>
<owl:EquivalentClasses>
<owl:Class IRI="urn:lsid:inb.bsc.es:response:RunPhylipProtdistResponse" />
<owl:ObjectIntersectionOf>
<owl:ObjectAllValuesFrom>
<owl:ObjectProperty IRI="#matrix" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Distance_Matrix" />
</owl:ObjectAllValuesFrom>
<owl:ObjectMaxCardinality cardinality="1">
<owl:ObjectProperty IRI="#matrix" />
</owl:ObjectMaxCardinality>
</owl:ObjectIntersectionOf>
</owl:EquivalentClasses>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Distance_Matrix" />
<owl:ObjectIntersectionOf>
<owl:ObjectAllValuesFrom>
<owl:ObjectProperty IRI="#Label" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:ArrayString" />
</owl:ObjectAllValuesFrom>
<owl:ObjectMaxCardinality cardinality="1">
<owl:ObjectProperty IRI="#Label" />
</owl:ObjectMaxCardinality>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:MatrixFloat" />
</owl:ObjectIntersectionOf>
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:ArrayString" />
<owl:ObjectIntersectionOf>
<owl:ObjectAllValuesFrom>
<owl:ObjectProperty IRI="#Element" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:ElementString" />
</owl:ObjectAllValuesFrom>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#Key" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#int" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#Key" />
</owl:DataMaxCardinality>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Array" />
</owl:ObjectIntersectionOf>
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:ElementString" />
<owl:ObjectIntersectionOf>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#Key" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#int" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#Key" />
</owl:DataMaxCardinality>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#Value" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#string" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#Value" />
</owl:DataMaxCardinality>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Element" />
</owl:ObjectIntersectionOf>
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Element" />
<owl:Class IRI="urn:lsid:bionemus.org:datatypes:NemusObject" />
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Array" />
<owl:Class IRI="urn:lsid:bionemus.org:datatypes:NemusObject" />
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:MatrixFloat" />
<owl:ObjectIntersectionOf>
<owl:ObjectAllValuesFrom>
<owl:ObjectProperty IRI="#Array" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:ArrayFloat" />
</owl:ObjectAllValuesFrom>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#Key" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#int" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#Key" />
</owl:DataMaxCardinality>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Matrix" />
</owl:ObjectIntersectionOf>
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:ArrayFloat" />
<owl:ObjectIntersectionOf>
<owl:ObjectAllValuesFrom>
<owl:ObjectProperty IRI="#Element" />
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:ElementFloat" />
</owl:ObjectAllValuesFrom>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#Key" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#int" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#Key" />
</owl:DataMaxCardinality>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Array" />
</owl:ObjectIntersectionOf>
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:ElementFloat" />
<owl:ObjectIntersectionOf>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#Key" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#int" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#Key" />
</owl:DataMaxCardinality>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#Value" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#float" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#Value" />
</owl:DataMaxCardinality>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Element" />
</owl:ObjectIntersectionOf>
</owl:SubClassOf>
<owl:SubClassOf>
<owl:Class IRI="urn:lsid:biomoby.org:objectclass:Matrix" />
<owl:Class IRI="urn:lsid:bionemus.org:datatypes:NemusObject" />
</owl:SubClassOf>
<owl:EquivalentClasses>
<owl:Class IRI="urn:lsid:inb.bsc.es:fault:RunPhylipProtdistFault" />
<owl:ObjectIntersectionOf>
<owl:DataAllValuesFrom>
<owl:DataProperty IRI="#message" />
<owl:Datatype IRI="http://www.w3.org/2001/XMLSchema#string" />
</owl:DataAllValuesFrom>
<owl:DataMaxCardinality cardinality="1">
<owl:DataProperty IRI="#message" />
</owl:DataMaxCardinality>
</owl:ObjectIntersectionOf>
</owl:EquivalentClasses>
</owl:Ontology>
</definitions>